NOC:Thermodynamics for Biological Systems: Classical and Statistical Aspect


Lecture 1 - Introduction and review


Lecture 2 - Review (Continued...)


Lecture 3 - Need for analysis


Lecture 4 - Additional Thermodynamic Functions


Lecture 5 - State and Path Variables


Lecture 6 - Equations for a Closed System


Lecture 7 - Chemical Potential


Lecture 8 - Gibbs Duhem equation


Lecture 9 - Maxwell’s relations


Lecture 10 - Inter-relationships between thermodynamic variables (Continued...)


Lecture 11 - Some useful mathematical manipulations


Lecture 12 - Thermodynamic relations for a closed system with 1 mole of pure substance


Lecture 13 - Maximum work


Lecture 14 - Open systems


Lecture 15 - Equations of state - Virial equations


Lecture 16 - Equations of state - Cubic equations


Lecture 17 - Volume estimation


Lecture 18 - Volume estimation (Continued...)


Lecture 19 - Generalized correlations


Lecture 20 - Generalized correlations (Continued...)


Lecture 21 - Residual properties


Lecture 22 - Residual properties (Continued...)


Lecture 23 - Generalized correlations and residual properties


Lecture 24 - Fugacity coefficient estimation


Lecture 25 - Review of module 3


Lecture 26 - Learning aspects


Lecture 27 - Chemical potential formulations


Lecture 28 - Lewis and Randall rule


Lecture 29 - Partial molar properties


Lecture 30 - Partial molar property estimation from mixing experiments


Lecture 31 - Partial molar property estimation (Continued...)


Lecture 32 - Activity coefficient from excess property


Lecture 33 - Activity coefficient from excess property (Continued...)


Lecture 34 - Models for activity coefficient in a binary system


Lecture 35 - Models for activity coefficient for a binary system (Continued...)


Lecture 36 - Review of module 4


Lecture 37 - Criteria for phase equilibrium


Lecture 38 - Phase rule for non-reacting systems


Lecture 39 - Clausius Clayperon equation


Lecture 40 - Clausius Clayperon equation (Continued...)


Lecture 41 - Vapour liquid equilibrium


Lecture 42 - Vapour liquid equilibrium (Continued...)


Lecture 43 - Estimation of fugacity coefficient from P-V-T data at equilibrium


Lecture 44 - Liquid-liquid and solid-liquid equilibria


Lecture 45 - Review of module 5


Lecture 46 - Criteria for bioreaction equilibria


Lecture 47 - Phase rule for reacting biosystems


Lecture 48 - Equilibrium constants


Lecture 49 - Effect of temperature on the equilibrium constants


Lecture 50 - Reaction in liquid or solid phases


Lecture 51 - Free energy changes for some bioreactions


Lecture 52 - Electrolytes


Lecture 53 - Review of the classical thermodynamics part


Lecture 54 - Introduction to Statistical thermodynamics


Lecture 55 - Concepts of macro and microstates


Lecture 56 - Thermodynamic probability


Lecture 57 - Boltzmann distribution law


Lecture 58 - Defining β in Boltzmann distribution law


Lecture 59 - Relationship between partition function and thermodynamic quantities


Lecture 60 - Partition function of mono atomic gases


Lecture 61 - Entropy in terms of probablity


Lecture 62 - Gibbs paradox


Lecture 63 - Thermodynamic probability for distinguishable particles


Lecture 64 - Thermodynamic probability for indistinguishable particles


Lecture 65 - Sackur - Tetrode equation


Lecture 66 - Partition function and Helmholtz and Gibbs free energy


Lecture 67 - Ensemble approach


Lecture 68 - Ensemble average, time average, Ergodic hypothesis


Lecture 69 - Partition function for classical systems


Lecture 70 - Pair potentials for atomic systems


Lecture 71 - Potential for molecular systems


Lecture 72 - Computer code for LJ potential


Lecture 73 - Introduction to computer simulations


Lecture 74 - Computer simulations of macromolecules


Lecture 75 - MD simulation examples


Lecture 76 - Link between theory and experiments


Lecture 77 - MD protocol


Lecture 78 - Computer simulation tricks


Lecture 79 - Understanding force fields


Lecture 80 - Idea of Z-matrix


Lecture 81 - Basics of MD simulations


Lecture 82 - Integration algorithms


Lecture 83 - Calculation of Columbic force


Lecture 84 - Calculation of LJ force


Lecture 85 - Monte Carlo simulations


Lecture 86 - Analysis of MD trajectory


Lecture 87 - Case study (water)